<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN" "http://jats.nlm.nih.gov/publishing/1.2/JATS-journalpublishing1.dtd"><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="other" dtd-version="1.2" xml:lang="en">
    <front>
        <journal-meta>
            <journal-id journal-id-type="pmc">Gates Open Res</journal-id>
            <journal-title-group>
                <journal-title>Gates Open Research</journal-title>
            </journal-title-group>
            <issn pub-type="epub">2572-4754</issn>
            <publisher>
                <publisher-name>F1000 Research Limited</publisher-name>
                <publisher-loc>London, UK</publisher-loc>
            </publisher>
        </journal-meta>
        <article-meta>
            <article-id pub-id-type="doi">10.12688/gatesopenres.13199.1</article-id>
            <article-categories>
                <subj-group subj-group-type="heading">
                    <subject>Study Protocol</subject>
                </subj-group>
                <subj-group>
                    <subject>Articles</subject>
                </subj-group>
            </article-categories>
            <title-group>
                <article-title>Protocol for meta-research on the evidence informing micronutrient dietary reference intakes for pregnant and lactating women</article-title>
                <fn-group content-type="pub-status">
                    <fn>
                        <p>[version 1; peer review: 2 approved]</p>
                    </fn>
                </fn-group>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>He</surname>
                        <given-names>Siran</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-0452-355X</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Klatt</surname>
                        <given-names>Kevin C.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a2">2</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Rahnavard</surname>
                        <given-names>Ali</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0002-9710-0248</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Barberio</surname>
                        <given-names>Matthew D.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-0468-7842</uri>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <contrib contrib-type="author" corresp="no">
                    <name>
                        <surname>Gernand</surname>
                        <given-names>Alison D.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="aff" rid="a3">3</xref>
                </contrib>
                <contrib contrib-type="author" corresp="yes">
                    <name>
                        <surname>Smith</surname>
                        <given-names>Emily R.</given-names>
                    </name>
                    <role content-type="http://credit.niso.org/">Conceptualization</role>
                    <role content-type="http://credit.niso.org/">Data Curation</role>
                    <role content-type="http://credit.niso.org/">Formal Analysis</role>
                    <role content-type="http://credit.niso.org/">Funding Acquisition</role>
                    <role content-type="http://credit.niso.org/">Investigation</role>
                    <role content-type="http://credit.niso.org/">Methodology</role>
                    <role content-type="http://credit.niso.org/">Project Administration</role>
                    <role content-type="http://credit.niso.org/">Supervision</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Original Draft Preparation</role>
                    <role content-type="http://credit.niso.org/">Writing &#x2013; Review &amp; Editing</role>
                    <xref ref-type="corresp" rid="c1">a</xref>
                    <xref ref-type="aff" rid="a1">1</xref>
                </contrib>
                <aff id="a1">
                    <label>1</label>Milken Institute School of Public Health, The George Washington University, Washington, DC, 20052, USA</aff>
                <aff id="a2">
                    <label>2</label>USDA Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, 77030, USA</aff>
                <aff id="a3">
                    <label>3</label>Pennsylvania State University, University Park, PA, 16802, USA</aff>
            </contrib-group>
            <author-notes>
                <corresp id="c1">
                    <label>a</label>
                    <email xlink:href="mailto:emilysmith@email.gwu.edu">emilysmith@email.gwu.edu</email>
                </corresp>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>KCK&#x2019;s research has been funded by NIH, NICHD, USDA, and private industry (Balchem Inc). KCK is currently a scientific consultant for 2 start-up digital nutrition applications (Gian Health; Rebel Labs Inc). KCK is compensated for reviewing scientific abstracts annually for the Egg Nutrition Center. </p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>13</day>
                <month>11</month>
                <year>2020</year>
            </pub-date>
            <pub-date pub-type="collection">
                <year>2020</year>
            </pub-date>
            <volume>4</volume>
            <elocation-id>171</elocation-id>
            <history>
                <date date-type="accepted">
                    <day>6</day>
                    <month>11</month>
                    <year>2020</year>
                </date>
            </history>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2020 He S et al.</copyright-statement>
                <copyright-year>2020</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <self-uri content-type="pdf" xlink:href="https://gatesopenresearch.org/articles/4-171/pdf"/>
            <abstract>
                <p>Nutrient reference values are important parameters that guide nutrition and public health work globally. Micronutrient requirements during the peri-conception period are generally increased, which is essential in ensuring maternal, fetal, and neonatal health. Nevertheless, the current dietary reference intakes (DRIs) may be limited in terms of the methods used and the populations included, particularly the DRIs for pregnancy and lactation. In this proposed review, we will examine the methods (rigor of design, utilization of molecular methods, and presence of modern methods) and the population (inclusion of women, and in particular, pregnant and lactating people) in the studies used to inform the current DRIs. We will apply meta-science methods to this review, which involves formally reviewing the current evidence, and identifying opportunities to improve how we fund, perform, evaluate, and incorporate nutrition science into public health programs for better outcomes.</p>
            </abstract>
            <kwd-group kwd-group-type="author">
                <kwd>Nutrition reference value</kwd>
                <kwd>dietary reference intake</kwd>
                <kwd>meta-science</kwd>
                <kwd>inclusion</kwd>
                <kwd>pregnancy</kwd>
                <kwd>lactation</kwd>
            </kwd-group>
            <funding-group>
                <award-group id="fund-1" xlink:href="http://www.gatesfoundation.org">
                    <funding-source>Gates Foundation</funding-source>
                    <award-id>INV-016930</award-id>
                </award-group>
                <funding-statement>This work is funded by the Gates Foundation [Grant No INV-016930]. This review is a part of the grant entitled, Optimizing Maternal Nutrition: Adaptive Trials and Molecular Methods to Improve Maternal and Newborn Health.</funding-statement>
                <funding-statement>
                    <italic>The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</italic>
                </funding-statement>
            </funding-group>
        </article-meta>
    </front>
    <body>
        <sec sec-type="intro">
            <title>Introduction</title>
            <sec>
                <title>Rationale</title>
                <p>Nutrient reference values (NRVs) play an essential role in promoting the health and well-being of a population. Conceptually, NRVs are meant to assess the risk of deficiency and inadequacy while avoiding excessive intakes for healthy populations, and to be utilized in planning adequate diets for individuals and populations. The key components of NRVs are the population average requirement (AR) and the safe upper intake level (UL)
                    <sup>
                        <xref ref-type="bibr" rid="ref-1">1</xref>
                    </sup>. In the 1990s, a group of experts proposed a then novel approach for setting new nutrient intake recommendations. These dietary reference intake (DRI) values were initially adopted in the US, in collaboration with Canada and the UK
                    <sup>
                        <xref ref-type="bibr" rid="ref-1">1</xref>
                    </sup>.</p>
                <p>The World Health Organization (WHO) also provides NRVs (for vitamins and minerals) in a 2004 document, which is based on a 1998 convening joining the WHO and the Food and Agriculture Organization (FAO) of the United Nations
                    <sup>
                        <xref ref-type="bibr" rid="ref-2">2</xref>
                    </sup>. However, the DRIs are more widely used. This review will focus on the DRIs developed by the US, UK, and Canada, and not the WHO NRVs, for two main reasons. First, the NRVs set forth by WHO/FAO, despite considering several contextual factors, have not been recently updated for micronutrients. While a few important updates have been made to the DRIs over the years, including calcium and vitamin D, and more recently sodium and potassium
                    <sup>
                        <xref ref-type="bibr" rid="ref-1">1</xref>,
                        <xref ref-type="bibr" rid="ref-3">3</xref>
                    </sup>. In contrast, the WHO NRVs have had updates only in sodium and potassium, as well as in calcium supplementation
                    <sup>
                        <xref ref-type="bibr" rid="ref-4">4</xref>&#x2013;
                        <xref ref-type="bibr" rid="ref-6">6</xref>
                    </sup>. Second, the DRIs and NRVs are similar for most micronutrients in terms of AR (but not UL). A few micronutrients have DRIs but not NRVs (in general or in pregnancy), such as choline, vitamin E, phosphorus
                    <sup>
                        <xref ref-type="bibr" rid="ref-2">2</xref>,
                        <xref ref-type="bibr" rid="ref-7">7</xref>&#x2013;
                        <xref ref-type="bibr" rid="ref-9">9</xref>
                    </sup>.</p>
                <p>Nutrient reference values are especially important during pregnancy. There is a biological imperative for increased nutrient intake, and there are well-documented maternal and fetal consequences of inadequate nutrition during the periconceptional, pregnancy, and postpartum periods
                    <sup>
                        <xref ref-type="bibr" rid="ref-10">10</xref>
                    </sup>. Further, NRVs in pregnancy inform the composition of &#x201c;prenatal vitamins&#x201d;, or multiple micronutrient supplements (MMS), used in pregnancy to promote positive pregnancy outcomes
                    <sup>
                        <xref ref-type="bibr" rid="ref-11">11</xref>
                    </sup>. The commonly used UNIMMAP supplement for pregnancy includes 15 vitamins and minerals at the level recommended by the DRIs.</p>
                <p>Yet, there is growing recognition of the limited extent to which the DRI study populations represent all sub-populations, including pregnant and lactating women
                    <sup>
                        <xref ref-type="bibr" rid="ref-1">1</xref>
                    </sup>. Women have historically been underrepresented in medical research. For example, drug trials to date have been conducted almost exclusively in young men
                    <sup>
                        <xref ref-type="bibr" rid="ref-12">12</xref>
                    </sup>, and a recent review of clinical trials (including nutraceutical) in India found that less than 2% included pregnant women
                    <sup>
                        <xref ref-type="bibr" rid="ref-13">13</xref>
                    </sup>. This is problematic because there is likely to be sexual dimorphism in the physiology, metabolism, and related toxicity and efficacy of supplements and drugs. Further, there are clear ethical imperatives to include pregnant women in research because women deserve access to well-studied interventions
                    <sup>
                        <xref ref-type="bibr" rid="ref-14">14</xref>
                    </sup>. We hypothesize that nutrition science and the related evidence-based guidelines have similarly suffered from excluding women and pregnant women from research.</p>
                <p>Meta-research, or meta-science, is an evolving field focused on systematic evaluation of the way science is produced and used
                    <sup>
                        <xref ref-type="bibr" rid="ref-15">15</xref>
                    </sup>. There are five broad areas of focus for meta-science including: the way research is performing, or methods; the way people communicate about research, or reporting; the way we verify research, or reproducibility; the way we conduct peer review, or evaluation; and the way we reward research, or incentives
                    <sup>
                        <xref ref-type="bibr" rid="ref-15">15</xref>
                    </sup>. Meta-research is well suited to measure whether specific subpopulations are excluded from biomedical research and whether novel research methods are equally applied to problems or conditions that affect women, underrepresented minority populations, and people living in the global south.</p>
            </sec>
            <sec>
                <title>Objectives</title>
                <p>We aim to formally review the methods of research studies used to inform the DRIs and identify opportunities to improve how we fund, perform, evaluate, and incorporate nutrition science for improving public health. The objective of this meta-science study is to summarize the 
                    <italic toggle="yes">population</italic> and 
                    <italic toggle="yes">nutrition-science methods</italic> used in studies informing the nutrient reference values for women, and for pregnant and lactating women.</p>
            </sec>
            <sec>
                <title>Review questions</title>
                <p>This review is focused primarily on assessing the population and methods used in the studies informing the development of DRIs:</p>
                <list list-type="bullet">
                    <list-item>
                        <label>1.</label>
                        <p>
                            <bold>Population (Women).</bold> To what extent do the studies informing the population average requirement (AR) and safe upper levels of intake (ULs) include female subjects? Is there variation in the subjects&#x2019; race or ethnicity, nutritional or anthropometric status, and health or disease status?</p>
                    </list-item>
                    <list-item>
                        <label>2.</label>
                        <p>
                            <bold>Population (Pregnancy and Lactation).</bold> To what extent do the studies informing the population average requirement (AR) and safe upper levels of intake (ULs) include women across the life course, specifically pregnant and lactating people?</p>
                    </list-item>
                    <list-item>
                        <label>3.</label>
                        <p>
                            <bold>Methods (Study Design)</bold>. Do studies utilize best-in-class methods including: controlled feeding studies and/or well-designed intervention and observational cohorts?</p>
                    </list-item>
                    <list-item>
                        <label>4.</label>
                        <p>
                            <bold>Methods (Molecular)</bold>: Do studies assess functional and metabolic outcomes? Do studies utilize integrated approaches, determining alterations in absorption, kinetics and whole-body nutrient losses using mixed methods approaches (e.g. balance designs, isotopes)?</p>
                    </list-item>
                    <list-item>
                        <label>5.</label>
                        <p>
                            <bold>Methods (Modern)</bold>. Do studies utilize modern methods including: metabolomics, proteomics, data analytics, or adaptive and/or target trial methods? Modern omics technologies include liquid chromatography mass spectrometry for metabolite profiling and protein profiling. Modern data analytic approaches include computational, statistical, and deep learning techniques to analyze omics data with high-dimensionality, correlation between features and zero-inflated data.</p>
                    </list-item>
                </list>
                <p>Secondary research questions include:</p>
                <list list-type="bullet">
                    <list-item>
                        <label>1.</label>
                        <p>
                            <bold>Representativeness</bold> (external generalizability) of the study population: To what extent can we generalize the findings from this study population to other populations?</p>
                    </list-item>
                </list>
                <p>This review study will 
                    <italic toggle="yes">not</italic> assess the quality of the research or risk of bias in each study. Nor will it assess whether the interpretation and conclusions of the studies are accurate or appropriate.</p>
            </sec>
        </sec>
        <sec sec-type="methods">
            <title>Methods</title>
            <p>The research will take part in four phases: 1) search, 2) screening, 3) data abstraction, and 4) data analysis. 
                <xref ref-type="fig" rid="f1">Figure 1</xref> provides a snapshot of the process.</p>
            <fig fig-type="figure" id="f1" orientation="portrait" position="float">
                <label>Figure 1. </label>
                <caption>
                    <title>Major components of the meta-review research process.</title>
                </caption>
                <graphic orientation="portrait" position="float" xlink:href="https://gatesopenresearch-files.f1000.com/manuscripts/14407/c8ac17ee-7bad-480d-b482-bbc91373842c_figure1.gif"/>
            </fig>
            <sec>
                <title>Search</title>
                <p>The search process will begin with identifying the indicators considered by the committee to establish the DRI. All references in the &#x201c;Selection of Indicators for Estimating the Requirement for [nutrient]&#x201d; section will be abstracted. We will also abstract references in the &#x201c;Findings by Life Stage and Gender Group&#x201d; Section, specifically for the &#x201c;Adults&#x201d;, &#x201c;Pregnancy&#x201d;, and &#x201c;Lactation&#x201d; sub-sections. Finally, we will abstract references in the &#x201c;Tolerable Upper Intake Levels&#x201d; section. The full reference (as listed in the DRI document) and the section in which it appeared will be recorded.</p>
                <p>There are two exceptions in the search process requiring slight adjustments to the search strategy. First, for vitamin B2 (riboflavin), an additional section will be included, &#x201c;Approaches for Deriving the Estimated Average Requirement&#x201d; because this section provided an overview of B2-related references used to determine the EARs. Second, the latest (2011) calcium and vitamin D report has a different layout of the chapters and sections from other reports. We will abstract references from three chapters in this report: Chapter 4, &#x201c;Review of Potential Indicators of Adequacy and Selection of Indicators: Calcium and Vitamin D&#x201d; (Tables 4&#x2013;8, 4&#x2013;9, 4&#x2013;11, 4&#x2013;12 and the preeclampsia section will be our focus); Chapter 5, &#x201c;Dietary Reference Intakes for Adequacy: Calcium and Vitamin D&#x201d;; and Chapter 6, &#x201c;Tolerable Upper Intake Levels: Calcium and Vitamin D&#x201d;. To ensure the completeness of the data, we will also abstract references in the &#x201c;life stages&#x201d; section of the 1997 calcium and vitamin D report, which determined adequate intakes (AIs) but not estimated average requirements (EARs) for these two nutrients (EARs were set in the 2011 report).  </p>
                <p>The following five documents will be reviewed during the search:</p>
                <list list-type="bullet">
                    <list-item>
                        <label>1.</label>
                        <p>Institute of Medicine (IOM) 1998. Dietary Reference Intakes for Thiamin, Riboflavin, Niacin, Vitamin B6, Folate, Vitamin B12, Pantothenic Acid, Biotin, and Choline. Washington, DC: The National Academies Press.</p>
                    </list-item>
                    <list-item>
                        <label>2.</label>
                        <p>IOM 2000. Dietary Reference Intakes for Vitamin C, Vitamin E, Selenium, and Carotenoids. Washington, DC: The National Academies Press.</p>
                    </list-item>
                    <list-item>
                        <label>3.</label>
                        <p>IOM 2001. Dietary Reference Intakes for Vitamin A, Vitamin K, Arsenic, Boron, Chromium, Copper, Iodine, Iron, Manganese, Molybdenum, Nickel, Silicon, Vanadium, and Zinc. Washington, DC: The National Academies Press. (
                            <italic toggle="yes">We will focus on Vitamin A, Vitamin K, Iodine, Iron, and Zinc in this report</italic>)</p>
                    </list-item>
                    <list-item>
                        <label>4.</label>
                        <p>IOM 2011. Dietary Reference Intakes for Calcium and Vitamin D. Washington, DC: The National Academies Press.</p>
                    </list-item>
                    <list-item>
                        <label>5.</label>
                        <p>IOM 1997. Dietary Reference Intakes for Calcium, Phosphorus, Magnesium, Vitamin D, and Fluoride. Washington, DC: The National Academies Press. (
                            <italic toggle="yes">We will focus on Phosphorus and Magnesium in this report; we will also extract references for calcium and vitamin D to supplement the 2011 report references</italic>)</p>
                    </list-item>
                </list>
                <p>Three documents will not be reviewed, given that the focus of this meta-research is micronutrient DRIs:</p>
                <list list-type="bullet">
                    <list-item>
                        <label>1.</label>
                        <p>National Academies of Sciences, Engineering, and Medicine 2019. Dietary Reference Intakes for Sodium and Potassium. Washington, DC: The National Academies Press.</p>
                    </list-item>
                    <list-item>
                        <label>2.</label>
                        <p>IOM 2005. Dietary Reference Intakes for Water, Potassium, Sodium, Chloride, and Sulfate. Washington, DC: The National Academies Press.</p>
                    </list-item>
                    <list-item>
                        <label>3.</label>
                        <p>IOM 2005. Dietary Reference Intakes for Energy, Carbohydrate, Fiber, Fat, Fatty Acids, Cholesterol, Protein, and Amino Acids. Washington, DC: The National Academies Press.</p>
                    </list-item>
                </list>
            </sec>
            <sec>
                <title>Screening</title>
                <p>Two researchers will be assigned to each nutrient list and will independently screen the references: one researcher as the main screener and the other for quality control. The rapid screening phase will involve reviewing the DRI document and the study title to determine whether the study meets the inclusion criteria for the study. The product of this screening step will be a list of final records for full-text review and data extraction. </p>
                <p>
                    <bold>
                        <italic toggle="yes">Inclusion criteria</italic>
                    </bold>
                </p>
                <list list-type="bullet">
                    <list-item>
                        <label>1.</label>
                        <p>The study was used to identify an appropriate indicator to set the DRI.</p>
                    </list-item>
                    <list-item>
                        <label>2.</label>
                        <p>The study was used to inform the determination of current DRI values.</p>
                    </list-item>
                    <list-item>
                        <label>3.</label>
                        <p>The study includes data about at least one of the following vitamin or minerals: 
                            <bold/>Thiamin, Riboflavin, Niacin, Vitamin B6, Folate, Vitamin B12, Pantothenic Acid, Biotin, Choline, Vitamin C, Vitamin E, Selenium, Carotenoids, Vitamin A, Vitamin K, Copper, Iodine, Iron, Zinc, Calcium Vitamin D, Phosphorus, and Magnesium
                            <sup>
                                <xref ref-type="other" rid="FN1">1</xref>
                            </sup>.</p>
                    </list-item>
                    <list-item>
                        <label>4.</label>
                        <p>The study presents primary data (and is not a meta-analysis or modeling study)  </p>
                    </list-item>
                </list>
                <p>
                    <bold>
                        <italic toggle="yes">Exclusion criteria</italic>
                    </bold>
                </p>
                <list list-type="bullet">
                    <list-item>
                        <label>1.</label>
                        <p>Studies for indicator selection: exclude the reference if a particular indicator was mentioned in the DRI report, but was not used to determine EAR/AIs. (
                            <italic toggle="yes">e.g., in the Thiamin chapter, a few indicators were noted as &#x201c;None of these was judged to be a dependable criterion of thiamin status</italic>).</p>
                    </list-item>
                    <list-item>
                        <label>2.</label>
                        <p>Other studies: exclude the reference if this study was mentioned in the report for a particular life stage / UL determination, but with additional comment about it not being used in setting the final DRIs. (
                            <italic toggle="yes">e.g., in the Thiamin chapter, pregnancy section, a few studies were noted as &#x201c;Data from the studies cited above are equivocal about the effects of pregnancy on thiamin requirements, and thus are not useful in refining this estimate&#x201d;</italic>)</p>
                    </list-item>
                    <list-item>
                        <label>3.</label>
                        <p>If the UL cannot be determined for this nutrient, all references in the UL section will be excluded.</p>
                    </list-item>
                </list>
            </sec>
            <sec>
                <title>Data abstraction</title>
                <p>We will abstract data for all studies that pass through the screening phase. Data will be entered in a study-specific data extraction form, and the following data will be collected.</p>
                <p>
                    <bold>
                        <italic toggle="yes">Administrative information, study identification</italic>
                    </bold>
                </p>
                <list list-type="bullet">
                    <list-item>
                        <p>Which micronutrient is this study in regard to?</p>
                    </list-item>
                    <list-item>
                        <p>Which section and subsection of the DRI report chapter was this reference cited?</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>Indicators (subsections include the name of the indicators)</p>
                            </list-item>
                            <list-item>
                                <p>Life stages (subsections include adulthood, pregnancy, lactation, and related human milk sections)</p>
                            </list-item>
                            <list-item>
                                <p>UL determination (subsections include hazard identification, dose-response assessment, intake assessment, and risk characterization)</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>Study ID (Last name of the first author, followed by year, e.g., Smith 2010)</p>
                    </list-item>
                    <list-item>
                        <p>Full reference (original style as cited in the report)</p>
                    </list-item>
                    <list-item>
                        <p>Funding source(s) </p>
                    </list-item>
                    <list-item>
                        <p>Is the article an open-access publication?</p>
                    </list-item>
                    <list-item>
                        <p>Inclusion/exclusion at full-text stage, reasons for exclusion include:</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>Article cannot be found (through direct online search or through interlibrary loan request)</p>
                            </list-item>
                            <list-item>
                                <p>This is a review article and do not provide primary data to help determine DRIs</p>
                            </list-item>
                        </list>
                    </list-item>
                </list>
                <p>
                    <bold>
                        <italic toggle="yes">Study methods</italic>
                    </bold>
                </p>
                <list list-type="bullet">
                    <list-item>
                        <p>Type of study population: is this a human and/or non-human study? (if 
                            <italic toggle="yes">in vitro</italic> study, end of data collection, e.g., cell, organ, tissue) </p>
                    </list-item>
                    <list-item>
                        <p>What is the design of study?</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>Randomized controlled trial</p>
                            </list-item>
                            <list-item>
                                <p>Quasi-experimental study (e.g., treatment study without randomization)</p>
                            </list-item>
                            <list-item>
                                <p>Cross-over trial</p>
                            </list-item>
                            <list-item>
                                <p>Cohort study</p>
                            </list-item>
                            <list-item>
                                <p>Case-control study</p>
                            </list-item>
                            <list-item>
                                <p>Cross-sectional study</p>
                            </list-item>
                            <list-item>
                                <p>Case report</p>
                            </list-item>
                            <list-item>
                                <p>Modeling, kinetics, and other secondary data analysis study</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>Describe the study design briefly</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>What was the intervention / exposure / status?</p>
                            </list-item>
                            <list-item>
                                <p>Is there a control group? (If yes, brief description of the control)</p>
                            </list-item>
                            <list-item>
                                <p>Any outcome pertaining to women&#x2019;s health? (if yes, brief description of the outcome)</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>Rigorous design:</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>Is this a controlled feeding study?</p>
                            </list-item>
                            <list-item>
                                <p>Is this a randomized controlled trial?</p>
                            </list-item>
                            <list-item>
                                <p>Does this study have repeated measurements on the same participants / subjects over time? (longitudinal design)</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>Molecular design:</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>Does this study use stable isotope?</p>
                            </list-item>
                            <list-item>
                                <p>Is this a balance study (measured input and excretion)?</p>
                            </list-item>
                            <list-item>
                                <p>Does this study measure biomarkers for micronutrient status?</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>Modern design:</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>Does the study use any &#x201c;-omics&#x201d; method?</p>
                            </list-item>
                        </list>
                    </list-item>
                </list>
                <p>
                    <bold>
                        <italic toggle="yes">Human population</italic>
                    </bold>
                </p>
                <list list-type="bullet">
                    <list-item>
                        <p>Where was the study conducted? (Country where study population resides)</p>
                    </list-item>
                    <list-item>
                        <p>Is this a healthy population?</p>
                    </list-item>
                    <list-item>
                        <p>Does this population share a common condition, comorbidity, or other characteristics? (if yes, describe the shared condition, e.g., all parenteral nutrition, all elderly patients)</p>
                    </list-item>
                    <list-item>
                        <p>Total sample size</p>
                    </list-item>
                    <list-item>
                        <p>Are women included in the study population? (If yes, # of females included)</p>
                    </list-item>
                    <list-item>
                        <p>Are pregnant or lactating people included in the study population? (If yes, # of pregnant or lactating people included)</p>
                    </list-item>
                    <list-item>
                        <p>What was the average/median age of the population (year)?</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>Were women of reproductive age included (14-45y)?</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>Is race/ethnicity reported? (if applicable, indicate # of people identified by each race/ethnicity) </p>
                    </list-item>
                </list>
                <p>
                    <bold>
                        <italic toggle="yes">Non-human subjects</italic>
                    </bold>
                </p>
                <list list-type="bullet">
                    <list-item>
                        <p>Species/breed if animal study</p>
                    </list-item>
                    <list-item>
                        <p>Total sample sizes (n)</p>
                    </list-item>
                    <list-item>
                        <p>Are female subjects included? (If yes, Total # females included)</p>
                    </list-item>
                    <list-item>
                        <p>Are pregnant or lactating animals included? (If yes, Total # pregnant or lactating animals included)</p>
                    </list-item>
                    <list-item>
                        <p>Is this a special group of subjects? (If yes, describe the shared condition, e.g., gene-knockout animal model, animals with shared comorbidities, all aged or all young animals, etc.)</p>
                    </list-item>
                    <list-item>
                        <p>Other information relevant to our review</p>
                    </list-item>
                </list>
            </sec>
            <sec>
                <title>Analysis plan</title>
                <p>After the completion of full-text data extraction, qualitative synthesis will be conducted for all included studies, separately for each micronutrient (and combined for all selected nutrients as needed). The synthesis will prioritize the research questions in terms of population characteristics and methods used in the included studies. We will also import the cleaned dataset into a statistical software (R version 4.0.4, R Core Team, Vienna, Austria) for analysis
                    <sup>
                        <xref ref-type="bibr" rid="ref-16">16</xref>
                    </sup>. We will conduct univariate descriptive analysis (e.g., summarizing number of included studies for each nutrient); between-group comparisons (e.g., to compare findings between two nutrients, or between two sub-groups), including the Student&#x2019;s 
                    <italic toggle="yes">t</italic>-test (or non-parametric test such as the Mann-Whitney 
                    <italic toggle="yes">U</italic> test), chi-squared test; as well as trend test (e.g., to examine annual trends of the publications for individual and all included nutrients).</p>
                <list list-type="bullet">
                    <list-item>
                        <p>
                            <bold>Population (Women).</bold>
                        </p>
                        <list list-type="bullet">
                            <list-item>
                                <p>% women overall and refs in indicator, AR, UL sections</p>
                            </list-item>
                            <list-item>
                                <p>% women of reproductive age?</p>
                            </list-item>
                            <list-item>
                                <p>% URM overall and refs in indicator, AR, UL sections</p>
                            </list-item>
                            <list-item>
                                <p>% low / high BMI overall?</p>
                            </list-item>
                            <list-item>
                                <p>% healthy subjects overall</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Population (Pregnancy and Lactation).</bold>
                        </p>
                        <list list-type="bullet">
                            <list-item>
                                <p>% pregnant women/animals overall and refs in indicator, AR, UL sections</p>
                            </list-item>
                            <list-item>
                                <p>% lactating women/animals overall and refs in indicator, AR, UL sections</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Methods (Rigorous Design)</bold>.</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>% studies used controlled feeding in indicator, AR, UL sections</p>
                            </list-item>
                            <list-item>
                                <p>% studies used randomized controlled trials in indicator, AR, UL sections</p>
                            </list-item>
                            <list-item>
                                <p>% studies had well-designed interventions in indicator, AR, UL sections</p>
                            </list-item>
                            <list-item>
                                <p>% studies were observational cohorts</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Methods (Molecular Design)</bold>:</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>% studies used stable isotope methods in indicator, AR, UL sections</p>
                            </list-item>
                            <list-item>
                                <p>% studies measured biomarkers for micronutrient status in indicator, AR, UL sections</p>
                            </list-item>
                        </list>
                    </list-item>
                    <list-item>
                        <p>
                            <bold>Methods (Modern Design)</bold>.</p>
                        <list list-type="bullet">
                            <list-item>
                                <p>% studies used any -omics methods in indicator, AR, UL sections</p>
                            </list-item>
                        </list>
                    </list-item>
                </list>
            </sec>
            <sec>
                <title>Dissemination plan</title>
                <p>We will publish the paper in an open access scientific journal. Depending on the amount of evidence we eventually review and generate, there may be more than one manuscript as a result of this project. We will upload our primary (raw) data upon completion of the review to an approved online repository (e.g., Figshare or Harvard Dataverse). We will then share the repository DOI with the manuscript.</p>
            </sec>
            <sec>
                <title>Proposed timeline</title>
                <p>
                    <xref ref-type="fig" rid="f2">Figure 2</xref> shows the proposed timeline of the study. At time of publication, we have now completed the compiling of references (pulled citations from the DRI reports), and are currently screening the references. In addition, we have pilot-tested the entire review process for one micronutrient (vitamin B12).</p>
                <fig fig-type="figure" id="f2" orientation="portrait" position="float">
                    <label>Figure 2. </label>
                    <caption>
                        <title>Proposed timeline of the meta-review.</title>
                        <p>* Steps 2 to 4 will be conducted concurrently (e.g., we will screen B12 references first, and then conduct full-text data extraction for B12 while starting the screening of vitamin A)</p>
                    </caption>
                    <graphic orientation="portrait" position="float" xlink:href="https://gatesopenresearch-files.f1000.com/manuscripts/14407/c8ac17ee-7bad-480d-b482-bbc91373842c_figure2.gif"/>
                </fig>
            </sec>
        </sec>
        <sec>
            <title>Data availability</title>
            <sec>
                <title>Underlying data</title>
                <p>No underlying data are associated with this article.</p>
            </sec>
        </sec>
        <sec>
            <title>Notes</title>
            <p id="FN1">
                <sup>1</sup>We excluded several nutrients from the proposed meta-review for the following reasons: i) not a micronutrient, including water, energy, carbohydrate, fiber, fat, fatty acids, cholesterol, protein, and amino acids; ii) an estimated average requirement (EAR) or adequate intake (AI) was not set for a given nutrient, including arsenic, boron, nickel, silicon, vanadium; iii) the UL is not determinable in current DRI, owing to lack of data of adverse effects, and concern regarding lack of ability to handle excess amount, including arsenic, chromium, silicon, sulfate, vanadium; iv) source of intake should be from food only to prevent high levels of intake, including arsenic, chromium, silicon, sulfate, vanadium; and v) not determinable owing to a lack of data of a specific toxicological adverse effect, including sodium and potassium.</p>
        </sec>
    </body>
    <back>
        <ack>
            <title>Acknowledgements</title>
            <p>The authors would like to thank Padmini Kucherlapaty and Carolyn Brandt at the George Washington University for their contribution to this project.</p>
        </ack>
        <sec>
            <title>Author contributions</title>
            <p>SH drafted the protocol and contributed to conceptualizing the study. KCK provided extensive edits to the protocol. AR, MDB, and AG provided edits to the protocol. ERS conceptualized the study, led the review team, drafted the protocol, and provided extensive edits to the protocol. All authors approve the final version of this protocol.</p>
        </sec>
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    <sub-article article-type="reviewer-report" id="report30259">
        <front-stub>
            <article-id pub-id-type="doi">10.21956/gatesopenres.14407.r30259</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Rahmannia</surname>
                        <given-names>Sofa</given-names>
                    </name>
                    <xref ref-type="aff" rid="r30259a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-2988-1334</uri>
                </contrib>
                <aff id="r30259a1">
                    <label>1</label>Faculty of Medicine, Universitas Pasundan, Bandung, Indonesia</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>10</day>
                <month>2</month>
                <year>2021</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2021 Rahmannia S</copyright-statement>
                <copyright-year>2021</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport30259" related-article-type="peer-reviewed-article" xlink:href="10.12688/gatesopenres.13199.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This study reminds us to re-evaluate existing recommendations along with developments in science and technology. Moreover, DRI is the foundation for determining intervention plans, evaluations, and policies in various sectors. The steps the authors took were excellent, clear, and replicable in other populations and age groups.</p>
            <p> </p>
            <p> In Phase #2: Screening, the authors may explain what the second researcher will do as a quality controller. It would be better if the two researchers screened simultaneously and matched the results; if there were differences, it could be directly discussed or invited a third researcher. If possible, include the name (with initials) of the investigator conducting the screening.</p>
            <p> </p>
            <p> In Phase #3: Data Abstraction, the authors may assess the reference used to observe the absorption/bioavailability. Whether it is enough with a balance study (measured input and excretion) only, or is there a reference to observe the micronutrient levels biomarker in circulation.</p>
            <p> </p>
            <p> This study focuses on women, pregnancy, and lactation. However, for this population, especially in low- and middle-income countries, it is encouraged to note the possibility of pregnancy and lactation in the adolescents' population. Therefore, it is recommended to be considered by the team, primarily if it is found in Phase #3 Data Abstraction.</p>
            <p> </p>
            <p> The authors are also suggested to elaborate on dietary reference values on specific nutrients from other sources such as Hotz (2007
                <sup>
                    <xref ref-type="bibr" rid="rep-ref-30259-1">1</xref>
                </sup>) and Arimond 
                <italic>et al. </italic>(2011
                <sup>
                    <xref ref-type="bibr" rid="rep-ref-30259-2">2</xref>
                </sup>).</p>
            <p>Is the study design appropriate for the research question?</p>
            <p>Yes</p>
            <p>Is the rationale for, and objectives of, the study clearly described?</p>
            <p>Yes</p>
            <p>Are sufficient details of the methods provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Are the datasets clearly presented in a useable and accessible format?</p>
            <p>Not applicable</p>
            <p>Reviewer Expertise:</p>
            <p>Maternal and Child Nutrition | Dietary intake</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
        <back>
            <ref-list>
                <title>References</title>
                <ref id="rep-ref-30259-1">
                    <label>1</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Dietary indicators for assessing the adequacy of population zinc intakes.</article-title>
                        <source>
                            <italic>Food Nutr Bull</italic>
                        </source>.<year>2007</year>;<volume>28</volume>(<issue>3 Suppl</issue>) :
                        <elocation-id>10.1177/15648265070283S304</elocation-id>
                        <fpage>S430</fpage>-<lpage>53</lpage>
                        <pub-id pub-id-type="pmid">17988006</pub-id>
                        <pub-id pub-id-type="doi">10.1177/15648265070283S304</pub-id>
                    </mixed-citation>
                </ref>
                <ref id="rep-ref-30259-2">
                    <label>2</label>
                    <mixed-citation>
                        <person-group person-group-type="author"/>:
                        <article-title>Dietary Diversity as a Measure of Micronutrient Adequacy of Women&#x2019;s Diets in Resource-Poor Areas</article-title>.
                        <source>
                            <italic>Fanta 2-Bridge</italic>
                        </source>.<year>2011</year>;
                        <ext-link ext-link-type="uri" xlink:href="https://www.fantaproject.org/research/womens-dietary-diversity-project">Reference source</ext-link>
                    </mixed-citation>
                </ref>
            </ref-list>
        </back>
    </sub-article>
    <sub-article article-type="reviewer-report" id="report30260">
        <front-stub>
            <article-id pub-id-type="doi">10.21956/gatesopenres.14407.r30260</article-id>
            <title-group>
                <article-title>Reviewer response for version 1</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="author">
                    <name>
                        <surname>Bailey</surname>
                        <given-names>Regan L.</given-names>
                    </name>
                    <xref ref-type="aff" rid="r30260a1">1</xref>
                    <role>Referee</role>
                    <uri content-type="orcid">https://orcid.org/0000-0003-0181-6223</uri>
                </contrib>
                <aff id="r30260a1">
                    <label>1</label>Department of Nutrition Science, Purdue University, West Lafayette, IN, USA</aff>
            </contrib-group>
            <author-notes>
                <fn fn-type="conflict">
                    <p>
                        <bold>Competing interests: </bold>No competing interests were disclosed.</p>
                </fn>
            </author-notes>
            <pub-date pub-type="epub">
                <day>4</day>
                <month>2</month>
                <year>2021</year>
            </pub-date>
            <permissions>
                <copyright-statement>Copyright: &#x00a9; 2021 Bailey RL</copyright-statement>
                <copyright-year>2021</copyright-year>
                <license xlink:href="https://creativecommons.org/licenses/by/4.0/">
                    <license-p>This is an open access peer review report distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
                </license>
            </permissions>
            <related-article ext-link-type="doi" id="relatedArticleReport30260" related-article-type="peer-reviewed-article" xlink:href="10.12688/gatesopenres.13199.1"/>
            <custom-meta-group>
                <custom-meta>
                    <meta-name>recommendation</meta-name>
                    <meta-value>approve</meta-value>
                </custom-meta>
            </custom-meta-group>
        </front-stub>
        <body>
            <p>This work summarizes, using a meta-research approach, how nutrient reference intakes were established for pregnant and lactating women in the North American context (i.e. The Dietary Reference Intakes), and is an important contribution to the literature. The authors are to be applauded for pre-publishing efforts a priori to review. The work plan is well organized, clearly written, and scientifically sound.</p>
            <p> </p>
            <p> Please clarify, is the AR or EAR being used in the global context to harmonize with WHO/FAO, and if the UL is specifically the Tolerable Upper Intake Level or used in the global context?</p>
            <p> </p>
            <p> Meta-research may be new to some readers, if possible consider expanding the last paragraph of the introduction.</p>
            <p> </p>
            <p> Consider inviting FNB staff to collaborate (suggest Anne Yaktine as a first point of contact), they are a tremendous resource and will have knowledge not found in the reference section of the reports.</p>
            <p> </p>
            <p> Assuming inclusion criteria refers to all forms of the micronutrients listed, if not clarify.</p>
            <p> </p>
            <p> You may wish to examine the evidence scanning paper by Brannon 
                <italic>et al.</italic> (2016
                <sup>
                    <xref ref-type="bibr" rid="rep-ref-30260-1">1</xref>
                </sup>). Efforts are being made to scan the literature to trigger if a DRI should be updated.</p>
            <p>Is the study design appropriate for the research question?</p>
            <p>Yes</p>
            <p>Is the rationale for, and objectives of, the study clearly described?</p>
            <p>Yes</p>
            <p>Are sufficient details of the methods provided to allow replication by others?</p>
            <p>Yes</p>
            <p>Are the datasets clearly presented in a useable and accessible format?</p>
            <p>Not applicable</p>
            <p>Reviewer Expertise:</p>
            <p>Dietary assessment, nutrition epidemiology, NHANES, dietary supplements, precision nutrition</p>
            <p>I confirm that I have read this submission and believe that I have an appropriate level of expertise to confirm that it is of an acceptable scientific standard.</p>
        </body>
        <back>
            <ref-list>
                <title>References</title>
                <ref id="rep-ref-30260-1">
                    <label>1</label>
                    <mixed-citation publication-type="journal">
                        <person-group person-group-type="author"/>:
                        <article-title>Scanning for new evidence to prioritize updates to the Dietary Reference Intakes: case studies for thiamin and phosphorus.</article-title>
                        <source>
                            <italic>Am J Clin Nutr</italic>
                        </source>.<volume>104</volume>(<issue>5</issue>) :
                        <elocation-id>10.3945/ajcn.115.128256</elocation-id>
                        <fpage>1366</fpage>-<lpage>1377</lpage>
                        <pub-id pub-id-type="pmid">27733406</pub-id>
                        <pub-id pub-id-type="doi">10.3945/ajcn.115.128256</pub-id>
                    </mixed-citation>
                </ref>
            </ref-list>
        </back>
    </sub-article>
</article>
